PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G214200.1.p
Common NameLOC101782151, SETIT_007022mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 293aa    MW: 32527.6 Da    PI: 9.1237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G214200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.26.9e-12126171247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         g WT  E+ l++++ + +G g+Wk I++++ ++Rt+ q+ s+ qky
  Seita.4G214200.1.p 126 GFWTMPEHRLFLRGLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKY 171
                         67*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.881120176IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-10121174IPR009057Homeodomain-like
SMARTSM007176.0E-9124174IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-15125175IPR009057Homeodomain-like
PfamPF002492.8E-9128171IPR001005SANT/Myb domain
CDDcd001673.52E-8128172No hitNo description
TIGRFAMsTIGR015574.6E-13128174IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDPTKTNGEW SASEIKMVKS LIARYKANKN YTADMNKKHS DIINEVHAMF PLKERLQVIS  60
LYADLIVEMM QSTTDNSSYY FVAASRDLVN NNFEIPVEDP AIDNMRVSQA VPLRQSAPRM  120
QRLRTGFWTM PEHRLFLRGL QVYGRGNWKN ISKYFVTTRT PVQVSSHAQK YFRRIGNNAH  180
KQRYSINDIG LYDAEPWAQN NNSDWEGFIT SGAYNSNHIG AGGQHATMNN LAQVQPPILY  240
HASQASSSSQ VATLAIDKKI GAASSSVALV IEGAGSSQAA CLGDQLGDFL SD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967177.10.0PREDICTED: myb-like protein H
TrEMBLK3XYL40.0K3XYL4_SETIT; Uncharacterized protein
STRINGSi007022m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.16e-22MYB family protein